PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.242910.2
Common NameCsa_3G810510, LOC101204523
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 367aa    MW: 39746.1 Da    PI: 9.1459
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.242910.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.59.8e-13294339655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L++l+P+     +k  + a++L +Av+YIk+Lq
  Cucsa.242910.2 294 SIAERVRRTRISERMRKLQDLVPNM----DKQTNTADMLDLAVDYIKELQ 339
                     689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.32288338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-16291348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.90E-13292341No hitNo description
Gene3DG3DSA:4.10.280.105.6E-15293349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9294339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-12294344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MGTNTHQSFQ QPNSALLRFR SAPSSLFADF SHGIDSKRLN PFEGSESERL VSRFGSRADG  60
CNSNDSESPV AGNYSSGLPP HYPRLSSAVN CSSSSSSSSC SSSSSSMCSS LGFLGSNLVR  120
QSSSPAGVLS QLNQNGYGGG SFSRLSGNNN GVEVVSPSSN RLNSQISFSS LVPSSLGMFP  180
QISEQVVGNE KLSNSNNGET QFFTPSGFPF ASWNESSQFS ETFPGIKRDP DSNKKFSSGH  240
QNGEIGNRVH LLSHHLSLPK NVSDVASIEK LLQLQDAVPC RIRAKRGCAT HPRSIAERVR  300
RTRISERMRK LQDLVPNMDK QTNTADMLDL AVDYIKELQK QFKTLSDNRA NCVCVNMQKP  360
LSNQIM*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004136581.10.0PREDICTED: transcription factor bHLH130
SwissprotQ66GR32e-92BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A0A0LH010.0A0A0A0LH01_CUCSA; Uncharacterized protein
STRINGVIT_08s0007g07810.t011e-112(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-92bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]